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Bioinformatics Genome databases  Related topics:   Cancer         Health      Agriculture       Nutrition

Baycol Watchdog

List of Genome Databases

• Nucleotide Sequence Data Bases:
  • GenBank - Nucleotide Sequence DB (NCBI, USA)
  • EMBL-DB (European Bioinformatics Institute, UK)
  • DDBJ - DNA Data Bank of Japan (National Institute of Genetics, Japan)
• GDB - Genome Data Base at Johns Hopkins University (USA).
• OMIM - Online Mendelian Inheritance of Man - This catalog of human genes and genetic diseases authored and edited by Victor A. McKusick contains textual and reference information provided by NCBI server (USA).
• A Gene Map of the Human Genome is created by an international consortium to map gene-based sequence tagged site markers on a set of a two radiation hybrid panels and a YAC library.
• The Human Transcript Map
  Electronic version of the Science wall chart summarizing over 16,000 human genes that have been mapped relative to a framework map that contains about 1000 polymorphic genetic markers.
• Human Genome Sequence Data at HGC (Berkeley Lab., USA)
• GENETHON (GENETHON Genome Center, France)
• GENATLAS in INFOBIOGEN (France)
• IMGT - ImMunoGeneTics Database (France)
• HUGEN - Human Gene Encyclopedia at EIMB - Engelhardt Institute of Molecular Biology (Moscow, Russia).
• TIGR Human Gene Index integrates research results from international human EST and gene research projects, and represents a non-redundant view of human genes. The Institute of Genomic Research located in Washington DC provides details of its genome sequencing projects and genetics resources.
• Human Gene Mutation Database - Information on known gene lesions responsible for human inherited diseases, searchable by disease or gene name. University of Wales - College of Medicine (Cardiff, UK)
• GeneCards Project Bioinformatics Unit, Genome Center and Weizmann Institute of Science (Israel)
• KEGG - Kyoto Encyclopedia of Genes and Genomes The Kanehisa laboratory (in the Institute for Chemical Research, Kyoto University) and the Human Genome Center (in the Institute of Medical Science, University of Tokyo, Japan)
• LDB - The Location Database is a database for constructing fully integrated genetic and physical maps. The ldb program generates an integrated map (known as the summary map) from partial maps of physical, genetic, regional, mouse homology and cytogenetic data. (Genetic Epidemiology Group of University of Southampton, UK)
• STS table and physical maps (5q) from LBNL - Lawrence Berkeley National Laboratory Genome Center (USA)
• IMGT - Immunogenetics Database from EBI - European Bioinformatics Institute (UK)
• Transcription Factor Database at ICIG (Novosibirsk, Russia) and at GBF-Braunsweig (Germany)
• Transcription Region Database at ICIG (Novosibirsk, Russia)
• Transcriptional Regulation of Oncogenes at ICIG (Novosibirsk, Russia)
• RHDB - Radiation Hybrid Database from EBI - European Bioinformatics Institute (UK)
• Restriction Enzyme Database (REBASE)
• Codons for nuclear genes
• Estimated sizes for human chromosomes
• A database of human repeated DNA

at Virtual Genome Center

Protein Databases and Servers

• -Protein Information Resources (UK)
• PIR - Protein Information Resource (USA)
• OWL - Composite Protein Sequence Database (UK)
• PDB - Protein Data Bank (USA) - is an archive of experimentally determined three-dimensional structures of biologically macromolecules.
• Kabat Database of Proteins of Immunological Interest (USA)
• Protein Research Foundation - PRF (Japan)
• HotMolecBase (Israel) QUEST Protein Database Center (USA)
• Structural Classification of Proteins (SCoP) (UK)
• ProDom Protein Domain Database
• PROLYSIS - protease and protease inhibitors (Univ. of Tours, France)
• SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc), a minimal level of redundancy and high level of integration with other databases (ExPASy, Switzerland).
• PROSITE - Dictionary of protein sites and patterns (ExPASy, Switzerland)
• SWISS-2DPAGE - Two-dimensional polyacrylamide gel electrophoresis database (ExPASy, Switzerland)
• PUMA Database: Phylogeny, Metabolism, Alignments (Argonne National Laboratory, USA)
• SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules (ExPASy, Switzerland)
• SWISS-MODEL Repository - A database of automatically generated protein models (ExPASy, Switzerland)
• ENZYME - Enzyme nomenclature database (ExPASy, Switzerland)

Other (non-Human) Genome Databases and Genome Project Servers

• Agricultural Genome (National Agricultural Library)
• Arabidopsis Genome Database (AAtDB)
• Arabidopsis thaliana Database Big Blue and MutaMouse Web Site
• C. elegans Genome Database (ACeDB)
• Integrated Genome Database (IGD)
• Maize Genome Database (MaizeDB)
• Mouse and Rat Research Home Page from Eric Mercer
• Mouse Genome Informatics from Jackson Lab (USA)
• Mycobacterium Genome Database (MycDB)
• Portable Dictionary of the Mouse Genome >Reference Library DataBase (RLDB2)
• Saccharomyces Genomic Information Resource
• TBASE - Transgenic and Targeted knockout mice database (at John Hopkins Univ., USA)
• Transgenic and Targeted Mutant Animal Database (at Oak Ridge)

Uncategorized links

• Defense Technical Information Center - Reports on DoD laboratory activites
• All Russian Collection of Microorganisms (Puschino, Russia)
• Paul N. Hengen's Home Page - Editor of biosci.methds-reagnts
• Vector Database from Stephen Miseners

Last modified 26 March 2001 by Bioinformatics Center :  [email protected]